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ENCODE GRAMMAR: A deep learning model resource for decoding the DNA sequence logic of regulatory elements in the human genome
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Beyond coverage tracks: fine-tuning AlphaGenome's splicing heads from scratch
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Chorus: chatting with genomic oracles
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Cherimoya: a lightweight genomic sequence-to-function model built for large-scale design and understanding
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Benchmarking seq2func models on distal enhancer effects with CRISPRi screens
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Benchmarking AlphaGenome on NVIDIA GPUs: latency, memory, and feasibility across sequence lengths
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Porting AlphaGenome to PyTorch
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Fine-tuning AlphaGenome in native JAX/Haiku
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Adapting AlphaGenome to MPRA data
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